2N0K
Chemical shift assignments and structure of the alpha-crystallin domain from human, HSPB5
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
2 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 6.5 | ambient | 295 | |
3 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
4 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
5 | 2D 1H-13C HSQC aliphatic | 1.0 mM [U-100% 13C; U-100% 15N] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 100% D2O | 100 | 7.5 | ambient | 295 | |
6 | 2D 1H-13C HSQC aromatic | 1.0 mM [U-100% 13C; U-100% 15N] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 100% D2O | 100 | 7.5 | ambient | 295 | |
7 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
8 | 3D HBHA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
9 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
10 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
11 | 3D HN(CO)CA | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
12 | 3D HN(COCA)CB | 0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
13 | 3D HCCH-TOCSY | 1.0 mM [U-100% 13C; U-100% 15N] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 100% D2O | 100 | 7.5 | ambient | 295 | |
14 | 3D H(CCO)NH | 1.0 mM [U-100% 13C; U-100% 15N; 50% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 | |
15 | 3D C(CO)NH | 1.0 mM [U-100% 13C; U-100% 15N; 50% 2H] HSPB5-ACD, 50 mM sodium phosphate, 100 mM sodium chloride, .1 mM EDTA, 1 mM PMSF | 90% H2O/10% D2O | 100 | 7.5 | ambient | 295 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 500 |
4 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 9 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | Solution structure was determined with NOEs and RDCs. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | peak picking | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
6 | peak picking | NMRView | Johnson, One Moon Scientific | |
7 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
8 | peak picking | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
9 | structure solution | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
10 | chemical shift assignment | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
11 | peak picking | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
12 | structure solution | RosettaOligomer | (RosettaOligomer)-Sgourakis, Lange, DiMaio, Andre, Fitzkee, Rossi, Montelione, Bax, Baker | |
13 | chemical shift assignment | RosettaOligomer | (RosettaOligomer)-Sgourakis, Lange, DiMaio, Andre, Fitzkee, Rossi, Montelione, Bax, Baker | |
14 | peak picking | RosettaOligomer | (RosettaOligomer)-Sgourakis, Lange, DiMaio, Andre, Fitzkee, Rossi, Montelione, Bax, Baker | |
15 | refinement | TALOS | Cornilescu, Delaglio and Bax | |
16 | chemical shift assignment | TALOS | Cornilescu, Delaglio and Bax | |
17 | peak picking | TALOS | Cornilescu, Delaglio and Bax | |
18 | data analysis | GUARDD | (GUARDD)-Kleckner, Foster | |
19 | chemical shift assignment | GUARDD | (GUARDD)-Kleckner, Foster | |
20 | peak picking | GUARDD | (GUARDD)-Kleckner, Foster | |
21 | refinement | RosettaOligomer |