2N8N
Solution structure of translation initiation factor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCO | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
2 | 3D HCACO | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
3 | 3D HNCA | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
4 | 3D HN(CO)CA | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
5 | 3D HNCACB | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
6 | 3D HN(COCA)CB | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
7 | 3D 1H-15N NOESY | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
8 | 3D 1H-13C NOESY | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
9 | 3D HCCH-TOCSY | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 | |
10 | 3D 1H-15N TOCSY | 0.1mM PMSF-1, 1mM EDTA-2, 50mM sodium chloride-3, 20mM MES-4 | 90% H2O/10% D2O | 50 | 6 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |