2NCZ

Solution NMR structures of BRD4 ET domain in complex with NSD3_1 peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT90% H2O/10% D2O6.5ambient298
23D HNCACB10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT90% H2O/10% D2O6.5ambient298
33D CBCA(CO)NH10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT90% H2O/10% D2O6.5ambient298
43D 1H-15N NOESY10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT90% H2O/10% D2O6.5ambient298
53D 1H-13C NOESY aliphatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.5ambient298
63D 1H-13C NOESY aromatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.5ambient298
73D filtered 1H-13C NOESY aliphatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.5ambient298
83D filtered 1H-13C NOESY aromatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE900
3BrukerAVANCE600
4BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementARIA2.3Linge, O'Donoghue and Nilges
2chemical shift calculationNMRPipe2.3Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3processingNMRPipe2.3Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4peak pickingNMRView5.04Johnson, One Moon Scientific
5chemical shift assignmentNMRView5.04Johnson, One Moon Scientific
6data analysisNMRView5.04Johnson, One Moon Scientific
7refinementTALOSCornilescu, Delaglio and Bax
8geometry optimizationCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
9structure solutionCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
10refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
11collectionTopSpin2.1Bruker Biospin
12structure solutionProcheckNMRLaskowski and MacArthur