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Soluble domain of Rieske Iron Sulfur Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2NUK pdb entry 2NUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 276 1.5 M ammonium sulfate, 20% glycerol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 276K
Crystal Properties Matthews coefficient Solvent content 2.24 45.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.637 α = 90 b = 70.637 β = 90 c = 54.602 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 13.33 99.8 0.05 16.7 5.3 54430 54430 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.15 99.7 0.13 12 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2NUK 1.1 13.33 51609 2769 99.98 0.12478 0.12406 0.1248 0.13811 0.1402 RANDOM 9.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.507 r_sphericity_free 22.367 r_dihedral_angle_4_deg 11.454 r_dihedral_angle_3_deg 8.739 r_dihedral_angle_1_deg 5.222 r_sphericity_bonded 2.643 r_scangle_it 1.756 r_angle_refined_deg 1.719 r_mcangle_it 1.573 r_scbond_it 1.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.507 r_sphericity_free 22.367 r_dihedral_angle_4_deg 11.454 r_dihedral_angle_3_deg 8.739 r_dihedral_angle_1_deg 5.222 r_sphericity_bonded 2.643 r_scangle_it 1.756 r_angle_refined_deg 1.719 r_mcangle_it 1.573 r_scbond_it 1.332 r_angle_other_deg 1.225 r_mcbond_it 1.202 r_rigid_bond_restr 0.767 r_mcbond_other 0.545 r_symmetry_vdw_refined 0.381 r_nbd_refined 0.193 r_nbd_other 0.186 r_symmetry_hbond_refined 0.182 r_symmetry_vdw_other 0.172 r_nbtor_refined 0.17 r_xyhbond_nbd_other 0.161 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.092 r_nbtor_other 0.086 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1065 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing