☰ Navigation Tabs
Crystal structure of GltPh in complex with L-Asp
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XFH PDB ENTRY 1xfh
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.64 73.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.296 α = 90 b = 115.296 β = 90 c = 323.781 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.96 100 89.9 0.074 17.1 5.2 15137
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.5 47.8 0.36 2 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1xfh 2.96 100 15137 1728 69.28 0.238 0.236 0.2348 0.265 0.2615 RANDOM 101.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.86 1.93 3.86 -5.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.627 r_dihedral_angle_3_deg 22.652 r_dihedral_angle_4_deg 20.757 r_dihedral_angle_1_deg 7.565 r_angle_refined_deg 1.849 r_mcangle_it 1.834 r_scangle_it 1.553 r_scbond_it 1.151 r_mcbond_it 1.092 r_nbtor_refined 0.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.627 r_dihedral_angle_3_deg 22.652 r_dihedral_angle_4_deg 20.757 r_dihedral_angle_1_deg 7.565 r_angle_refined_deg 1.849 r_mcangle_it 1.834 r_scangle_it 1.553 r_scbond_it 1.151 r_mcbond_it 1.092 r_nbtor_refined 0.349 r_nbd_refined 0.276 r_xyhbond_nbd_refined 0.229 r_symmetry_vdw_refined 0.122 r_chiral_restr 0.101 r_bond_refined_d 0.017 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8575 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling