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Carboxylesterase AeCXE1 from Actinidia eriantha covalently inhibited by paraoxon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O7R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 21% mPEG 5000, 0.2 M malic/KOH pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 47.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.078 α = 90 b = 53.908 β = 102.21 c = 42.366 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate osmic 2006-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 33.5 94 0.097 14.8 4.6 14481 14481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 90 0.426 3.7 4.2 2000
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 207R 2.3 33.5 13758 13758 723 93.52 0.18963 0.18963 0.18658 0.24868 0.2241 RANDOM 27.443
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.11 -0.32 0.43 1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.297 r_dihedral_angle_4_deg 21.673 r_dihedral_angle_3_deg 16.245 r_dihedral_angle_1_deg 6.952 r_scangle_it 3.85 r_scbond_it 2.548 r_angle_refined_deg 1.883 r_mcangle_it 1.675 r_mcbond_it 1.019 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.297 r_dihedral_angle_4_deg 21.673 r_dihedral_angle_3_deg 16.245 r_dihedral_angle_1_deg 6.952 r_scangle_it 3.85 r_scbond_it 2.548 r_angle_refined_deg 1.883 r_mcangle_it 1.675 r_mcbond_it 1.019 r_nbtor_refined 0.307 r_nbd_refined 0.23 r_symmetry_vdw_refined 0.228 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.121 r_symmetry_hbond_refined 0.085 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2403 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction CCP4 data scaling