2OU3

Crystal structure of a tellurite resistance protein of cog3793 (npun_f6341) from nostoc punctiforme pcc 73102 at 1.85 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5277NANODROP, 10.0% 2-propanol, 0.2M Zn(OAc)2, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2244.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.49α = 90
b = 56.19β = 90
c = 152.3γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 41m long Rh coated bent cylindrical mirror for horizontal and vertical focusing2007-01-28MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL1-50.911625, 0.979310, 0.979051SSRLBL1-5

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8529.31199.50.0878.312905115.09
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.92980.4151.995648

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8529.31128991147299.620.1630.1630.1610.213RANDOM16.088
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.66-0.48-0.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.977
r_dihedral_angle_4_deg15.504
r_dihedral_angle_3_deg14.464
r_scangle_it6.161
r_dihedral_angle_1_deg4.796
r_scbond_it4.789
r_mcangle_it2.531
r_mcbond_it1.855
r_angle_refined_deg1.469
r_angle_other_deg0.925
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.977
r_dihedral_angle_4_deg15.504
r_dihedral_angle_3_deg14.464
r_scangle_it6.161
r_dihedral_angle_1_deg4.796
r_scbond_it4.789
r_mcangle_it2.531
r_mcbond_it1.855
r_angle_refined_deg1.469
r_angle_other_deg0.925
r_mcbond_other0.389
r_symmetry_vdw_refined0.224
r_nbd_refined0.213
r_symmetry_vdw_other0.196
r_nbd_other0.195
r_nbtor_refined0.189
r_symmetry_hbond_refined0.181
r_xyhbond_nbd_refined0.176
r_nbtor_other0.088
r_chiral_restr0.077
r_metal_ion_refined0.039
r_symmetry_metal_ion_refined0.034
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2534
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms36

Software

Software
Software NamePurpose
MolProbitymodel building
SHELXphasing
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
ADSCdata collection
XDSdata reduction
autoSHARPphasing