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Crystal structure of the catalytic domain of rat phosphodiesterase 10A
Crystallization Crystal Properties Matthews coefficient Solvent content 2.8 56.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.657 α = 90 b = 120.657 β = 90 c = 83.273 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 65.12 83 0.093 10.1 4.73 42604
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.74 15.8 0.311 2.5 1.78 815
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 64.55 30424 2337 99.5 0.177 0.174 0.1851 0.206 0.2137 RANDOM 25.454
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 -0.38 -0.76 1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.564 r_scangle_it 3.857 r_scbond_it 2.384 r_mcangle_it 1.548 r_angle_refined_deg 1.534 r_angle_other_deg 0.881 r_mcbond_it 0.816 r_symmetry_vdw_other 0.263 r_symmetry_hbond_refined 0.254 r_nbd_other 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.564 r_scangle_it 3.857 r_scbond_it 2.384 r_mcangle_it 1.548 r_angle_refined_deg 1.534 r_angle_other_deg 0.881 r_mcbond_it 0.816 r_symmetry_vdw_other 0.263 r_symmetry_hbond_refined 0.254 r_nbd_other 0.235 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.156 r_chiral_restr 0.085 r_nbtor_other 0.082 r_metal_ion_refined 0.054 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2469 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 37
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction