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Ensemble refinement of the protein crystal structure of 12-oxo-phytodienoate reductase isoform 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q45 PDB entry 1Q45
Crystallization Crystal Properties Matthews coefficient Solvent content 2.37 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.113 α = 90 b = 85.068 β = 90 c = 121.824 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1Q45 2 24.9 50628 2572 91.1 0.18 0.1864 0.235 0.2388 RANDOM 21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.31 0.03
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.6 c_scangle_it 2.22 c_scbond_it 1.72 c_angle_deg 1.7 c_mcangle_it 1.6 c_mcbond_it 1.09 c_improper_angle_d 0.98 c_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5649 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms 62
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing