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Ensemble refinement of the crystal structure of GALT-like protein from Arabidopsis thaliana At5g18200
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZWJ PDB entry 1ZWJ
Crystallization Crystal Properties Matthews coefficient Solvent content 2.03 39.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.984 α = 90 b = 95.535 β = 90 c = 110.522 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1ZWJ 2.3 27.26 25917 2581 89.8 0.19 0.19 0.1983 0.27 0.27 RANDOM 43.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.25 6.71 -12.96
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.3 c_scangle_it 2.46 c_mcangle_it 2.31 c_scbond_it 1.85 c_mcbond_it 1.4 c_angle_deg 1.2 c_improper_angle_d 0.93 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4756 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 4
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing