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Ensemble refinement of the protein crystal structure of At1g77540-coenzyme A complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IL4 PDB entry 2IL4
Crystallization Crystal Properties Matthews coefficient Solvent content 2.24 45.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.905 α = 90 b = 63.941 β = 90.86 c = 29.525 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 2IL4 2.06 31.97 6424 358 99.2 0.171 0.171 0.1825 0.225 0.1833 RANDOM 29.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.4 c_angle_deg 3.6 c_scangle_it 3.48 c_scbond_it 2.58 c_mcangle_it 2.53 c_improper_angle_d 2.37 c_mcbond_it 1.61 c_bond_d 0.046
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 735 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 48
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing