X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.7293Sodium Citrate, Ammonium Sulphate, Magnesium Chloride, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0138.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.687α = 90
b = 80.687β = 90
c = 37.517γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATEMAR scanner 345 mm plate2007-03-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.255096.30.153.34.943314331
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.252.2995.30.5914.9233

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1TRZ2.2540.36391440299.750.1930.1860.264RANDOM35.43
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.735
r_dihedral_angle_1_deg17.372
r_dihedral_angle_4_deg16.8
r_dihedral_angle_3_deg16.502
r_scangle_it7.349
r_scbond_it5.867
r_mcangle_it3.456
r_mcbond_it2.76
r_angle_refined_deg2.611
r_symmetry_hbond_refined0.387
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.735
r_dihedral_angle_1_deg17.372
r_dihedral_angle_4_deg16.8
r_dihedral_angle_3_deg16.502
r_scangle_it7.349
r_scbond_it5.867
r_mcangle_it3.456
r_mcbond_it2.76
r_angle_refined_deg2.611
r_symmetry_hbond_refined0.387
r_nbtor_refined0.314
r_symmetry_vdw_refined0.299
r_nbd_refined0.233
r_chiral_restr0.2
r_xyhbond_nbd_refined0.179
r_symmetry_metal_ion_refined0.081
r_metal_ion_refined0.078
r_bond_refined_d0.037
r_gen_planes_refined0.013
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms803
Nucleic Acid Atoms
Solvent Atoms46
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
AUTOMARdata reduction
AMoREphasing