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Aedes Kynurenine Aminotransferase in Complex with Cysteine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YIY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 2 M ammonium sulfate, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.05 α = 90 b = 95.678 β = 90 c = 166.752 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 mirrors 2005-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1000 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 30 94.4 0.072 7.4 65484
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.96 2.03 67 0.274 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1yiy 1.96 28.67 56757 3057 91.49 0.2223 0.21995 0.2189 0.26708 0.2657 RANDOM 42.546
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.035 r_dihedral_angle_4_deg 19.157 r_dihedral_angle_3_deg 17.458 r_dihedral_angle_1_deg 11.405 r_scangle_it 5.138 r_scbond_it 3.896 r_mcangle_it 2.201 r_angle_refined_deg 1.852 r_mcbond_it 1.742 r_chiral_restr 0.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.035 r_dihedral_angle_4_deg 19.157 r_dihedral_angle_3_deg 17.458 r_dihedral_angle_1_deg 11.405 r_scangle_it 5.138 r_scbond_it 3.896 r_mcangle_it 2.201 r_angle_refined_deg 1.852 r_mcbond_it 1.742 r_chiral_restr 0.347 r_nbtor_refined 0.321 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.147 r_symmetry_vdw_refined 0.118 r_symmetry_hbond_refined 0.097 r_bond_refined_d 0.025 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6661 Nucleic Acid Atoms Solvent Atoms 468 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing