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Refinement of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1.37mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 120 7.0 ambient 298 2 3D 1H-13C NOESY 1.37mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 120 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 9.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 2 collection XwinNMR 3.5 Bruker Biospin 3 processing NMRPipe 20030801 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis NMRView 5.0.4 Johnson, One Moon Scientific 5 data analysis KUJIRA 0.9297 Kobayashi, N 6 structure solution CYANA 2.0.17 Guntert, Mumenthaler and Wuthrich