☰ Navigation Tabs
Hendra virus attachment glycoprotein in complex with human cell surface receptor ephrinB2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VSM PDB ENTRY 2VSM, NIV-G-EFNB2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25% PEG 3350 0.1 M BIS-TRIS PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.25 α = 90 b = 106.17 β = 90 c = 196.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77.2 CCD ADSC CCD MIRRORS 2006-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 30 93.9 0.21 6.1 7.6 17229 -3 29.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.4 82.7 0.83 2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2VSM, NIV-G-EFNB2 3.3 20 17118 870 82.7 0.3 0.3 0.287 0.35 0.3419 34.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -11.51 -25.959 0.467
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 22.701 f_angle_d 2.518 f_chiral_restr 0.093 f_plane_restr 0.019 f_bond_d 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8443 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing