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STRUCTURE OF THE TETRADECAMERIC OLIGOMERISATION DOMAIN OF CALCIUM- CALMODULIN DEPENDENT PROTEIN KINASE II DELTA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HKX PDB ENTRIES 1HKX,2UX0,2F86 experimental model PDB 2UX0 PDB ENTRIES 1HKX,2UX0,2F86 experimental model PDB 2F86 PDB ENTRIES 1HKX,2UX0,2F86
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 30% PEG400, 0.1M CADMIUM CHLORIDE, 0.1M SODIUM ACETATE PH4.6
Crystal Properties Matthews coefficient Solvent content 2.86 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.546 α = 90 b = 117.803 β = 111.92 c = 160.761 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 44.86 99.7 0.08 11.6 4.6 323492 84.77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 100 0.76 2.3 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1HKX,2UX0,2F86 2.7 44.8 68546 2134 99.5 0.212 0.211 0.2176 0.245 0.2469 RANDOM 36.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 -1.9 -2.28 2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.304 r_dihedral_angle_4_deg 18.693 r_dihedral_angle_3_deg 14.463 r_dihedral_angle_1_deg 6.48 r_scangle_it 3.508 r_scbond_it 2.082 r_angle_refined_deg 1.362 r_mcangle_it 1.198 r_angle_other_deg 0.898 r_mcbond_it 0.608
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.304 r_dihedral_angle_4_deg 18.693 r_dihedral_angle_3_deg 14.463 r_dihedral_angle_1_deg 6.48 r_scangle_it 3.508 r_scbond_it 2.082 r_angle_refined_deg 1.362 r_mcangle_it 1.198 r_angle_other_deg 0.898 r_mcbond_it 0.608 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13912 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing