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Crystal structure of the human MAGEA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 2.6 M NACL, 0.1 M TRIS PH 8
Crystal Properties Matthews coefficient Solvent content 3.7 66.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.63 α = 90 b = 81.63 β = 90 c = 210.891 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-01-23 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04 2 SYNCHROTRON SLS BEAMLINE X10SA 0.9782, 0.97105, 0.9789 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 42 99.7 0.07 13.9 6.4 19314 2.2 57.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 99.1 0.54 2.2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT NONE 2.3 40.81 18263 978 99.59 0.24434 0.24278 0.2406 0.27413 0.2791 RANDOM 38.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.53 1.27 2.53 -3.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.572 r_dihedral_angle_4_deg 21.14 r_dihedral_angle_3_deg 18.206 r_scangle_it 9.755 r_dihedral_angle_1_deg 7.203 r_scbond_it 6.837 r_mcangle_it 4.5 r_mcbond_it 2.455 r_angle_refined_deg 1.409 r_angle_other_deg 0.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.572 r_dihedral_angle_4_deg 21.14 r_dihedral_angle_3_deg 18.206 r_scangle_it 9.755 r_dihedral_angle_1_deg 7.203 r_scbond_it 6.837 r_mcangle_it 4.5 r_mcbond_it 2.455 r_angle_refined_deg 1.409 r_angle_other_deg 0.895 r_mcbond_other 0.562 r_chiral_restr 0.079 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1696 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing SHARP phasing REFMAC refinement