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N-terminal domain of BC2L-C Lectin from Burkholderia cenocepacia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.2M NABR, 0.1M BIS-TRIS PROPANE PH 6.5 AND 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 1.78 31.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.1 α = 90 b = 76.73 β = 90 c = 103.26 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 39.72 99.3 0.04 10.8 3.92 63845 2 10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.5 96.3 0.29 2.68 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.42 61.4 60601 3244 99.26 0.13315 0.1314 0.1819 0.16631 0.2059 RANDOM 7.694
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.11 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.252 r_dihedral_angle_4_deg 20.384 r_dihedral_angle_3_deg 10.856 r_dihedral_angle_1_deg 7.337 r_sphericity_free 6.208 r_scangle_it 3.417 r_scbond_it 2.537 r_sphericity_bonded 1.968 r_mcangle_it 1.846 r_angle_refined_deg 1.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.252 r_dihedral_angle_4_deg 20.384 r_dihedral_angle_3_deg 10.856 r_dihedral_angle_1_deg 7.337 r_sphericity_free 6.208 r_scangle_it 3.417 r_scbond_it 2.537 r_sphericity_bonded 1.968 r_mcangle_it 1.846 r_angle_refined_deg 1.513 r_rigid_bond_restr 1.234 r_mcbond_it 1.188 r_angle_other_deg 0.862 r_mcbond_other 0.46 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2895 Nucleic Acid Atoms Solvent Atoms 513 Heterogen Atoms 37
Software Software Software Name Purpose XDS data reduction XDS data scaling HKL2Map phasing ARP/wARP phasing REFMAC refinement