2XAS

Crystal structure of LSD1-CoREST in complex with a tranylcypromine derivative (MC2580, 14e)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1SODIUM-POTASSIUM TARTRATE, ADA BUFFER PH 6.5
Crystal Properties
Matthews coefficientSolvent content
4.2871.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 118.317α = 90
b = 179.693β = 90
c = 235.257γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.23099.90.0912.23.7416342

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.271.44083080399.780.200160.199740.22039RANDOM75.661
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.79-3.18-2.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.444
r_dihedral_angle_3_deg22.085
r_dihedral_angle_4_deg19.879
r_dihedral_angle_1_deg6.804
r_scangle_it3.189
r_scbond_it1.743
r_angle_refined_deg1.587
r_mcangle_it1.508
r_mcbond_it0.782
r_chiral_restr0.106
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.444
r_dihedral_angle_3_deg22.085
r_dihedral_angle_4_deg19.879
r_dihedral_angle_1_deg6.804
r_scangle_it3.189
r_scbond_it1.743
r_angle_refined_deg1.587
r_mcangle_it1.508
r_mcbond_it0.782
r_chiral_restr0.106
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6293
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms85

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling