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Crystal structure of 1-(4-(1-pyrrolidinylcarbonyl)phenyl)-3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazole in complex with the ligand binding domain of the Rat GluA2 receptor and glutamate at 2.2A resolution.
Crystallization Crystal Properties Matthews coefficient Solvent content 2.2 43.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.366 α = 90 b = 161.901 β = 90 c = 47.125 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40 89.2 0.1 13.8 4.3 40273
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.2 92.85 38643 1629 89.33 0.16802 0.16588 0.1716 0.21842 0.2236 RANDOM 28.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -0.14 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.917 r_dihedral_angle_4_deg 17.722 r_dihedral_angle_3_deg 14.766 r_dihedral_angle_1_deg 6.06 r_scangle_it 3.881 r_scbond_it 2.414 r_angle_refined_deg 1.633 r_mcangle_it 1.617 r_angle_other_deg 0.91 r_mcbond_it 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.917 r_dihedral_angle_4_deg 17.722 r_dihedral_angle_3_deg 14.766 r_dihedral_angle_1_deg 6.06 r_scangle_it 3.881 r_scbond_it 2.414 r_angle_refined_deg 1.633 r_mcangle_it 1.617 r_angle_other_deg 0.91 r_mcbond_it 0.87 r_mcbond_other 0.181 r_chiral_restr 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6046 Nucleic Acid Atoms Solvent Atoms 541 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement HKL data reduction SCALEPACK data scaling