2Y69
Bovine heart cytochrome c oxidase re-refined with molecular oxygen
X-RAY DIFFRACTION
Crystallization
| Crystal Properties | |
|---|---|
| Matthews coefficient | Solvent content |
| 3.75 | 67.17 |
Crystal Data
| Unit Cell | |
|---|---|
| Length ( Å ) | Angle ( ˚ ) |
| a = 183.697 | α = 90 |
| b = 206.991 | β = 90 |
| c = 178.251 | γ = 90 |
| Symmetry | |
|---|---|
| Space Group | P 21 21 21 |
Diffraction
| Diffraction Experiment | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
| 1 | 1 | x-ray | M | SINGLE WAVELENGTH | ||||||||||
Data Collection
Refinement
| Statistics | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | |||||
| X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 1.95 | 64.15 | 455500 | 16433 | 100 | 0.21207 | 0.21062 | 0.2094 | 0.24546 | 0.2394 | RANDOM | 45.538 | |||||
| Temperature Factor Modeling | ||||||
|---|---|---|---|---|---|---|
| Anisotropic B[1][1] | Anisotropic B[2][2] | Anisotropic B[3][3] | ||||
| 1.03 | 1.37 | -2.4 | ||||
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| r_dihedral_angle_2_deg | 33.149 |
| r_dihedral_angle_4_deg | 16.491 |
| r_dihedral_angle_3_deg | 15.098 |
| r_dihedral_angle_1_deg | 5.407 |
| r_scangle_it | 2.999 |
| r_scbond_it | 2.231 |
| r_angle_refined_deg | 1.469 |
| r_angle_other_deg | 1.469 |
| r_mcangle_it | 1.245 |
| r_mcbond_it | 0.748 |
| Non-Hydrogen Atoms Used in Refinement | |
|---|---|
| Non-Hydrogen Atoms | Number |
| Protein Atoms | 28264 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 1048 |
| Heterogen Atoms | 804 |
Software
| Software | |
|---|---|
| Software Name | Purpose |
| REFMAC | refinement |
