☰ Navigation Tabs
Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (Kce) from Candidatus Cloacamonas acidaminovorans (orthorombic form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PARTIAL MODEL FROM SEMET MAD PHASING IN DIFFERENT SPACE GROUP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 30% PEG8000, 0.08 M NA ACETATE, 100 MM NA-HEPES PH 7.5 .
Crystal Properties Matthews coefficient Solvent content 2.24 45.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.87 α = 90 b = 100.82 β = 90 c = 147.43 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD KIRKPATRICK-BAEZ PAIR OF BI-MORPH MIRRORS 2008-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 19.47 99.3 0.07 16.5 6.7 147835 3 20.28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.68 95.7 0.5 3 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PARTIAL MODEL FROM SEMET MAD PHASING IN DIFFERENT SPACE GROUP 1.59 19.45 147744 7448 98.51 0.1585 0.1577 0.1608 0.174 0.178 RANDOM 22.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.6188 -3.3384 0.7196
RMS Deviations Key Refinement Restraint Deviation t_omega_torsion 4.17 t_other_torsion 2.61 t_angle_deg 1 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_omega_torsion 4.17 t_other_torsion 2.61 t_angle_deg 1 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8367 Nucleic Acid Atoms Solvent Atoms 976 Heterogen Atoms 16
Software Software Software Name Purpose BUSTER refinement XDS data reduction SCALA data scaling AMoRE phasing