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A. nidulans chitin deacetylase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IW0 PDB ENTRY 2IW0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1M NAH2PO4, 5% HEXANEDIOL, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.06 39.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.64 α = 90 b = 64.52 β = 101.16 c = 86.54 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 51.4 99.5 0.08 10.3 3.6 26431 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.1 99.8 0.32 3.9 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IW0 1.99 84.9 25067 1334 99.5 0.159 0.157 0.205 0.2082 RANDOM 22.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.05 -0.64 -0.89 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.426 r_dihedral_angle_4_deg 21.56 r_dihedral_angle_3_deg 14.319 r_dihedral_angle_1_deg 6.236 r_scangle_it 5.141 r_scbond_it 3.38 r_angle_refined_deg 1.939 r_mcangle_it 1.882 r_mcbond_it 1.111 r_chiral_restr 0.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.426 r_dihedral_angle_4_deg 21.56 r_dihedral_angle_3_deg 14.319 r_dihedral_angle_1_deg 6.236 r_scangle_it 5.141 r_scbond_it 3.38 r_angle_refined_deg 1.939 r_mcangle_it 1.882 r_mcbond_it 1.111 r_chiral_restr 0.139 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3241 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing