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Crystal Structure of the First Bromodomain of Human Brd2 with the inhibitor GSK525762 (IBET)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 26% PEG 3350, 0.2 M (NH4)2SO4, 0.1 M HEPES PH 7.0.
Crystal Properties Matthews coefficient Solvent content 2 38.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.243 α = 90 b = 55.639 β = 93.63 c = 66.231 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2009-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 25.96 97.3 0.06 12.8 3.5 28832 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.09 95.5 0.32 3.9 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.98 25.96 27369 1461 100 0.15773 0.15546 0.1675 0.20079 0.2118 RANDOM 32.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.91 -0.32 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.67 r_dihedral_angle_4_deg 24.598 r_dihedral_angle_3_deg 12.696 r_dihedral_angle_1_deg 4.602 r_scangle_it 3.466 r_scbond_it 2.288 r_mcangle_it 1.727 r_angle_refined_deg 1.157 r_mcbond_it 0.93 r_angle_other_deg 0.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.67 r_dihedral_angle_4_deg 24.598 r_dihedral_angle_3_deg 12.696 r_dihedral_angle_1_deg 4.602 r_scangle_it 3.466 r_scbond_it 2.288 r_mcangle_it 1.727 r_angle_refined_deg 1.157 r_mcbond_it 0.93 r_angle_other_deg 0.817 r_mcbond_other 0.155 r_chiral_restr 0.064 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2738 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing