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Trypanosoma brucei PTR1 in complex with inhibitor WH16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X9G PDB ENTRY 2X9G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 RESERVOIR CONDITIONS: 100 MM SODIUM CITRATE PH 5, 1.8 M SODIUM ACETATE.
Crystal Properties Matthews coefficient Solvent content 2.1 41.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.28 α = 90 b = 90.74 β = 115.66 c = 84.29 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD MIRRORS 2009-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 31.41 94.5 0.07 15.8 5.2 87904 20.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 88.4 0.56 2.7 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X9G 1.8 31.41 83470 4413 94.19 0.18009 0.17864 0.1778 0.20716 0.205 RANDOM 19.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.36 2.12 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.415 r_dihedral_angle_4_deg 15.477 r_dihedral_angle_3_deg 13.71 r_dihedral_angle_1_deg 5.317 r_scangle_it 2.095 r_scbond_it 1.3 r_angle_refined_deg 1.17 r_mcangle_it 0.874 r_mcbond_it 0.455 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.415 r_dihedral_angle_4_deg 15.477 r_dihedral_angle_3_deg 13.71 r_dihedral_angle_1_deg 5.317 r_scangle_it 2.095 r_scbond_it 1.3 r_angle_refined_deg 1.17 r_mcangle_it 0.874 r_mcbond_it 0.455 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7418 Nucleic Acid Atoms Solvent Atoms 536 Heterogen Atoms 268
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing