2ZDZ

X-ray structure of Bace-1 in complex with compound 3.b.10


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.4298pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1141.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.308α = 90
b = 105.213β = 94.98
c = 50.999γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDBRUKER SMART 60002005-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
129996.50.10911.532529624417

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT259.762482624037125696.820.22040.218530.25551RANDOM24.514
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.01-0.260.140.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.93
r_dihedral_angle_4_deg17.267
r_dihedral_angle_3_deg14.588
r_dihedral_angle_1_deg5.876
r_scangle_it1.374
r_angle_refined_deg1.097
r_scbond_it0.838
r_mcangle_it0.832
r_mcbond_it0.479
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.93
r_dihedral_angle_4_deg17.267
r_dihedral_angle_3_deg14.588
r_dihedral_angle_1_deg5.876
r_scangle_it1.374
r_angle_refined_deg1.097
r_scbond_it0.838
r_mcangle_it0.832
r_mcbond_it0.479
r_nbtor_refined0.307
r_symmetry_vdw_refined0.199
r_symmetry_hbond_refined0.187
r_nbd_refined0.182
r_xyhbond_nbd_refined0.105
r_chiral_restr0.075
r_bond_refined_d0.007
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2911
Nucleic Acid Atoms
Solvent Atoms209
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing