2ZSY

Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [750 min]

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1MBC

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	batch	6	293	2.4M Ammonium sulfate, 10mM TrisHCl, 100mM Sodium phosphate, pH 6.0, batch, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
1.87	34.34

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 34.381	α = 90
b = 30.549	β = 105.63
c = 63.841	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	140	CCD	MAR CCD 165 mm		2008-02-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NW14A	0.827	Photon Factory	AR-NW14A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.21	50	72.1	0.056	7.5	3		28702		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.21	1.25	15.9			1.3	628

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1MBC	1.21	15.64	26343	1325	67.35	0.172	0.169	0.24	RANDOM	17.322

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.01		-0.01	-0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.858
r_dihedral_angle_4_deg	20.597
r_sphericity_free	16.597
r_dihedral_angle_3_deg	16.032
r_scangle_it	10.134
r_sphericity_bonded	8.612
r_scbond_it	7.361
r_dihedral_angle_1_deg	5.535
r_mcangle_it	5.35
r_rigid_bond_restr	4.924
r_mcbond_it	4.036
r_angle_refined_deg	3.377
r_nbtor_refined	0.338
r_metal_ion_refined	0.332
r_nbd_refined	0.32
r_chiral_restr	0.271
r_symmetry_vdw_refined	0.209
r_symmetry_hbond_refined	0.188
r_xyhbond_nbd_refined	0.155
r_bond_refined_d	0.046
r_gen_planes_refined	0.022

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1217
Nucleic Acid Atoms
Solvent Atoms	124
Heterogen Atoms	55

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling