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Crystal Structure of omega-Amino Acid:Pyruvate Aminotransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Dialysis 7.8 277 2.2M ammonium sulphate, 0.33M potassium phosphate buffer, pH 7.8, Dialysis, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.71 54.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.46 α = 90 b = 137.79 β = 90 c = 61.57 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 IMAGE PLATE RIGAKU mirrors 1995-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 1.0 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 55.9 73.6 0.032 21 13 137549 135011 15.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.19 17.6 0.773 0.26 17.6 3274
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.4 20 97574 5129 100 0.14675 0.14617 0.1473 0.15763 0.1463 RANDOM 17.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -1.05 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.985 r_scangle_it 3.963 r_scbond_it 2.446 r_mcangle_it 1.449 r_angle_refined_deg 1.341 r_mcbond_it 0.722 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.099 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.985 r_scangle_it 3.963 r_scbond_it 2.446 r_mcangle_it 1.449 r_angle_refined_deg 1.341 r_mcbond_it 0.722 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.099 r_chiral_restr 0.097 r_symmetry_hbond_refined 0.095 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3365 Nucleic Acid Atoms Solvent Atoms 371 Heterogen Atoms 16
Software Software Software Name Purpose BSS data collection REFMAC refinement DENZO data reduction SCALEPACK data scaling