X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52931.6M Ammonium sulfate, 0.1M Hepes pH7.5, 0.1M Sodium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2645.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.97α = 90
b = 111.14β = 90
c = 216.44γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU JUPITER 2102008-07-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11.0000SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.93108.471000.0610.061122200122200
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.931.971000.230.237249

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.93108.47115973115973613099.970.149230.149230.147180.18772RANDOM10.729
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.98-0.15-0.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.406
r_dihedral_angle_4_deg18.178
r_dihedral_angle_3_deg12.148
r_dihedral_angle_1_deg6.293
r_scangle_it3.154
r_scbond_it2.34
r_angle_refined_deg1.466
r_mcbond_it1.269
r_mcangle_it1.175
r_angle_other_deg0.958
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.406
r_dihedral_angle_4_deg18.178
r_dihedral_angle_3_deg12.148
r_dihedral_angle_1_deg6.293
r_scangle_it3.154
r_scbond_it2.34
r_angle_refined_deg1.466
r_mcbond_it1.269
r_mcangle_it1.175
r_angle_other_deg0.958
r_symmetry_vdw_other0.234
r_nbd_refined0.206
r_mcbond_other0.202
r_nbd_other0.193
r_nbtor_refined0.177
r_symmetry_hbond_refined0.161
r_xyhbond_nbd_refined0.149
r_symmetry_vdw_refined0.147
r_chiral_restr0.092
r_nbtor_other0.085
r_bond_refined_d0.015
r_bond_other_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12475
Nucleic Acid Atoms
Solvent Atoms1466
Heterogen Atoms174

Software

Software
Software NamePurpose
BSSdata collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling