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NEMO/IKK association domain structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 8 298 35% Peg 8K, 0.1M Tris pH 8, 0.2M Ammonium Chloride, 10mM Dithiothreitol., microbatch under oil, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.869 α = 90 b = 105.556 β = 90 c = 56.707 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Undulator, mirrors 2005-04-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9794,0.9799 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 38.9 93.4 0.072 7.9 12598 11760 2 2 70.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 69.4 0.396 1.7 1.7 849
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 38.9 11119 556 93.47 0.23961 0.23756 0.2766 0.28186 0.3225 RANDOM 41.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 1.01 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.444 r_dihedral_angle_4_deg 22.677 r_dihedral_angle_3_deg 20.636 r_dihedral_angle_1_deg 7.317 r_scangle_it 4.44 r_scbond_it 2.855 r_mcangle_it 2.028 r_angle_refined_deg 1.928 r_mcbond_it 1.245 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.444 r_dihedral_angle_4_deg 22.677 r_dihedral_angle_3_deg 20.636 r_dihedral_angle_1_deg 7.317 r_scangle_it 4.44 r_scbond_it 2.855 r_mcangle_it 2.028 r_angle_refined_deg 1.928 r_mcbond_it 1.245 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.28 r_xyhbond_nbd_refined 0.273 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.24 r_chiral_restr 0.139 r_bond_refined_d 0.022 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1599 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CBASS data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing