☰ Navigation Tabs
Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 Bis-Tris, Magnesium Chloride, PEG 3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 47.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.304 α = 90 b = 73.215 β = 90 c = 88.88 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-03-25 M MAD 2 1 x-ray 100 CCD MARRESEARCH 2005-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.0722, 1.7025, 1.0450 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 18-ID 0.9795 APS 18-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.55 37.99 99.2 0.037 31.2 6.6 44240
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD 1.55 37.99 44240 2221 99.13 0.191 0.189 0.1873 0.211 0.2117 32.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.179 0.313 0.465
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.297 f_angle_d 0.851 f_chiral_restr 0.056 f_bond_d 0.005 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1956 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing SOLOMON phasing PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data collection