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Crystal Structure Analysis of Focal Adhesion Kinase with a Methanesulfonamide Diaminopyrimidine Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 15% PEG 8000, 0.1M HEPES, 0.2M (NH4)2SO4, pH 7.5, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.14 42.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.46 α = 90 b = 47.825 β = 98.43 c = 63.067 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2004-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ DW 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 91 0.073 9.9 3.3 12589
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 59.1 0.208 2 816
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 32.76 12569 682 91.17 0.16 0.156 0.1651 0.234 0.2384 RANDOM 29.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 1.67 -0.7 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.869 r_dihedral_angle_4_deg 18.658 r_dihedral_angle_3_deg 14.955 r_dihedral_angle_1_deg 6.871 r_scangle_it 3.49 r_scbond_it 2.298 r_mcangle_it 1.387 r_mcbond_it 1.205 r_angle_refined_deg 0.794 r_angle_other_deg 0.628
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.869 r_dihedral_angle_4_deg 18.658 r_dihedral_angle_3_deg 14.955 r_dihedral_angle_1_deg 6.871 r_scangle_it 3.49 r_scbond_it 2.298 r_mcangle_it 1.387 r_mcbond_it 1.205 r_angle_refined_deg 0.794 r_angle_other_deg 0.628 r_symmetry_vdw_other 0.265 r_symmetry_hbond_refined 0.263 r_nbd_other 0.224 r_nbd_refined 0.219 r_nbtor_refined 0.189 r_mcbond_other 0.186 r_xyhbond_nbd_refined 0.184 r_symmetry_vdw_refined 0.126 r_nbtor_other 0.089 r_chiral_restr 0.051 r_gen_planes_refined 0.008 r_bond_refined_d 0.006 r_gen_planes_other 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2095 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 35
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction