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B-Raf Kinase in Complex with PLX4720
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 100mM BisTris at pH 6.0, 12.5% 2,5-hexanediol, and 12% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 2.35 47.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.574 α = 90 b = 105.502 β = 90 c = 110.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 CCD ADSC QUANTUM 210 2006-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 50 99.7 0.105 4.9 4.6 19778 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.57 2.75 100 0.562 1.3 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.57 50 18805 952 99.72 0.26078 0.25859 0.30334 RANDOM 18.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.04 -1.78 -2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.266 r_angle_refined_deg 2.059 r_scangle_it 2.053 r_scbond_it 1.359 r_angle_other_deg 1.052 r_mcangle_it 0.82 r_mcbond_it 0.492 r_xyhbond_nbd_refined 0.266 r_symmetry_vdw_other 0.251 r_nbd_refined 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.266 r_angle_refined_deg 2.059 r_scangle_it 2.053 r_scbond_it 1.359 r_angle_other_deg 1.052 r_mcangle_it 0.82 r_mcbond_it 0.492 r_xyhbond_nbd_refined 0.266 r_symmetry_vdw_other 0.251 r_nbd_refined 0.242 r_nbd_other 0.241 r_symmetry_hbond_refined 0.212 r_symmetry_vdw_refined 0.192 r_chiral_restr 0.176 r_nbtor_other 0.094 r_bond_refined_d 0.021 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4112 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction SCALA data scaling CCP4 phasing