3CCW

Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8293protein 15-20 mg/ml, Ligand (saturated),PEG 4000, MgCl2 0.2M, Tris-HCL pH8 0.1M, 7-10 days, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2645.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.933α = 90
b = 174.378β = 118.83
c = 76.084γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102003-06-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15088.80.05617.023.1187323

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.15087274264788.390.2180.2170.252RANDOM43.017
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.181.43-1.841.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.606
r_scangle_it1.938
r_scbond_it1.105
r_angle_refined_deg1.043
r_mcangle_it0.847
r_angle_other_deg0.757
r_mcbond_it0.449
r_nbd_other0.213
r_nbd_refined0.184
r_symmetry_hbond_refined0.171
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.606
r_scangle_it1.938
r_scbond_it1.105
r_angle_refined_deg1.043
r_mcangle_it0.847
r_angle_other_deg0.757
r_mcbond_it0.449
r_nbd_other0.213
r_nbd_refined0.184
r_symmetry_hbond_refined0.171
r_symmetry_vdw_other0.166
r_symmetry_vdw_refined0.165
r_xyhbond_nbd_refined0.147
r_nbtor_other0.08
r_chiral_restr0.061
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12259
Nucleic Acid Atoms
Solvent Atoms420
Heterogen Atoms144

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction