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The crystal structure of OspA deletion mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.45 293 38% PEG400, 0.1M Imidazole, 0.05M MgSO4, 11mg/ml, pH 6.45, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.303 α = 90 b = 53.91 β = 95.76 c = 55.854 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97934 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50 96.4 0.066 22 3.9 54134
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.29 84.5 0.231 5.18 3.3 4716
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.25 20 51336 51336 2742 96.5 0.1578 0.1578 0.15595 0.1581 0.1917 0.1908 RANDOM 13.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.76 1.6 -1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.692 r_dihedral_angle_3_deg 10.924 r_dihedral_angle_1_deg 5.787 r_sphericity_free 5.542 r_scangle_it 4.32 r_scbond_it 3.181 r_sphericity_bonded 3.12 r_mcangle_it 2.068 r_mcbond_it 1.579 r_angle_refined_deg 1.465
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.692 r_dihedral_angle_3_deg 10.924 r_dihedral_angle_1_deg 5.787 r_sphericity_free 5.542 r_scangle_it 4.32 r_scbond_it 3.181 r_sphericity_bonded 3.12 r_mcangle_it 2.068 r_mcbond_it 1.579 r_angle_refined_deg 1.465 r_rigid_bond_restr 1.421 r_dihedral_angle_4_deg 1.182 r_angle_other_deg 0.726 r_mcbond_other 0.673 r_nbd_refined 0.206 r_nbd_other 0.194 r_symmetry_vdw_refined 0.184 r_symmetry_vdw_other 0.181 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.145 r_nbtor_other 0.091 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1632 Nucleic Acid Atoms Solvent Atoms 434 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing