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Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 20-25% PEG1500, 0.1 M MIB buffer, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.46 49.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.948 α = 90 b = 89.385 β = 90 c = 91.251 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD dynamically bendable mirror 2007-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.978589 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 97.2 0.046 20.8 4.8 47357 47357 30.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 92.9 0.297 5.7 6065
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 19.79 46013 46103 2449 99.77 0.18517 0.18517 0.18377 0.1942 0.21183 0.2183 RANDOM 31.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.22 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.449 r_dihedral_angle_4_deg 17.067 r_dihedral_angle_3_deg 14.14 r_dihedral_angle_1_deg 5.701 r_scangle_it 2.268 r_scbond_it 1.486 r_angle_refined_deg 1.257 r_mcangle_it 1.154 r_angle_other_deg 0.836 r_mcbond_it 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.449 r_dihedral_angle_4_deg 17.067 r_dihedral_angle_3_deg 14.14 r_dihedral_angle_1_deg 5.701 r_scangle_it 2.268 r_scbond_it 1.486 r_angle_refined_deg 1.257 r_mcangle_it 1.154 r_angle_other_deg 0.836 r_mcbond_it 0.79 r_nbd_refined 0.195 r_symmetry_vdw_other 0.191 r_nbtor_refined 0.187 r_nbd_other 0.179 r_mcbond_other 0.136 r_xyhbond_nbd_refined 0.125 r_symmetry_vdw_refined 0.097 r_symmetry_hbond_refined 0.088 r_nbtor_other 0.081 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4110 Nucleic Acid Atoms 609 Solvent Atoms 321 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling REFMAC phasing