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Crystal structure of EcTrmB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 283 15% (w/v) PEG 3350, 150mM MgSO4, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.58 52.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.42 α = 90 b = 47.01 β = 90.01 c = 58.64 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2007-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 24.79 15183 46.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 24.79 14404 766 94.1 0.19457 0.19283 0.1941 0.22687 0.2307 RANDOM 20.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.02 -0.16 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.116 r_dihedral_angle_3_deg 11.696 r_dihedral_angle_4_deg 9.745 r_dihedral_angle_1_deg 5.466 r_scangle_it 2.189 r_scbond_it 1.347 r_angle_refined_deg 1.244 r_mcangle_it 0.788 r_mcbond_it 0.429 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.116 r_dihedral_angle_3_deg 11.696 r_dihedral_angle_4_deg 9.745 r_dihedral_angle_1_deg 5.466 r_scangle_it 2.189 r_scbond_it 1.347 r_angle_refined_deg 1.244 r_mcangle_it 0.788 r_mcbond_it 0.429 r_nbtor_refined 0.301 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.16 r_symmetry_hbond_refined 0.139 r_xyhbond_nbd_refined 0.109 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1662 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection MOSFLM data reduction SCALA data scaling SOLVE phasing