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human phosphodiestrase-5'GMP complex (EP), produced by soaking with 20mM cGMP+20 mM MnCl2+20 mM MgCl2 for 2 hours, and flash-cooled to liquid nitrogen temperature when substrate was still abudant.
Crystallization Crystal Properties Matthews coefficient Solvent content 4.69 73.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.992 α = 90 b = 103.992 β = 90 c = 269.762 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.4 0.077 18.9 4 66436 2 42.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.3 50 59549 6712 99.48 0.18846 0.18571 0.1894 0.21224 0.2161 RANDOM 33.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 1.75 -3.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.345 r_dihedral_angle_4_deg 19.481 r_dihedral_angle_3_deg 15.001 r_dihedral_angle_1_deg 5.378 r_scangle_it 2.473 r_scbond_it 1.711 r_angle_refined_deg 1.237 r_angle_other_deg 0.92 r_mcangle_it 0.917 r_mcbond_it 0.843
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.345 r_dihedral_angle_4_deg 19.481 r_dihedral_angle_3_deg 15.001 r_dihedral_angle_1_deg 5.378 r_scangle_it 2.473 r_scbond_it 1.711 r_angle_refined_deg 1.237 r_angle_other_deg 0.92 r_mcangle_it 0.917 r_mcbond_it 0.843 r_symmetry_vdw_other 0.288 r_symmetry_vdw_refined 0.254 r_nbd_refined 0.218 r_nbd_other 0.185 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.169 r_mcbond_other 0.132 r_symmetry_hbond_refined 0.119 r_nbtor_other 0.087 r_chiral_restr 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5384 Nucleic Acid Atoms Solvent Atoms 463 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement