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Crystal structures of the kinase domain of AKT2 in complex with ATP-competitive inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 298 14% PEG 2KMME, 100 mM Tris pH 8.0 and 10% ethanol diffused in. Seeded., vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.23 44.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.323 α = 90 b = 117.323 β = 90 c = 45.045 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 un-focused beam 2005-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.2 0.148 5.8 4.4 30554 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 95 0.648 0.648 1.6 3.3 2929
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 38.4 30542 1540 99.16 0.226 0.225 0.2254 0.246 0.2471 RANDOM 39.749
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 -0.23 -0.46 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.326 r_dihedral_angle_4_deg 15.8 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 5.045 r_angle_refined_deg 0.928 r_mcangle_it 0.893 r_mcbond_it 0.846 r_angle_other_deg 0.783 r_scangle_it 0.698 r_scbond_it 0.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.326 r_dihedral_angle_4_deg 15.8 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 5.045 r_angle_refined_deg 0.928 r_mcangle_it 0.893 r_mcbond_it 0.846 r_angle_other_deg 0.783 r_scangle_it 0.698 r_scbond_it 0.447 r_symmetry_vdw_other 0.222 r_nbd_other 0.173 r_nbd_refined 0.172 r_nbtor_refined 0.172 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.116 r_symmetry_hbond_refined 0.105 r_mcbond_other 0.105 r_nbtor_other 0.078 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5454 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 52
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction JDirector data collection HKL-2000 data reduction PHASER phasing