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Crystal structure of the ATP-binding domain of DesK in complex with ATP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 pH 9, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.78 55.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.379 α = 90 b = 49.078 β = 90 c = 81.436 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate 2008-02-19 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.737 42.035 97 0.078 0.078 8.616 4.8 17082 17082
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.737 1.82 84.5 0.504 0.504 1.4 4.6 2138
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.74 42.03 17044 859 98.46 0.167 0.164 0.1907 0.215 0.2285 RANDOM 26.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.21 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.63 r_sphericity_free 14.758 r_dihedral_angle_4_deg 14.423 r_dihedral_angle_3_deg 13.493 r_dihedral_angle_1_deg 6.72 r_scangle_it 4.968 r_scbond_it 3.211 r_mcangle_it 2.116 r_angle_refined_deg 1.946 r_mcbond_it 1.284
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.63 r_sphericity_free 14.758 r_dihedral_angle_4_deg 14.423 r_dihedral_angle_3_deg 13.493 r_dihedral_angle_1_deg 6.72 r_scangle_it 4.968 r_scbond_it 3.211 r_mcangle_it 2.116 r_angle_refined_deg 1.946 r_mcbond_it 1.284 r_angle_other_deg 1.009 r_mcbond_other 0.371 r_chiral_restr 0.106 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 987 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 44
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SHARP phasing