X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1F7A 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.2300pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties
Matthews coefficientSolvent content
2.0941.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.231α = 90
b = 59.54β = 82.22
c = 59.863γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200IMAGE PLATERIGAKU RAXIS IVYale Mirrors2007-08-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15095.80.06914.00735670120006
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1890.10.4931867

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1F7A2.14020000101695.790.1830.1790.249RANDOM38.666
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.130.251.041.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.71
r_dihedral_angle_4_deg20.246
r_dihedral_angle_3_deg15.567
r_dihedral_angle_1_deg7.243
r_scangle_it2.274
r_scbond_it1.585
r_angle_refined_deg1.413
r_mcangle_it1.068
r_mcbond_it0.888
r_angle_other_deg0.719
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.71
r_dihedral_angle_4_deg20.246
r_dihedral_angle_3_deg15.567
r_dihedral_angle_1_deg7.243
r_scangle_it2.274
r_scbond_it1.585
r_angle_refined_deg1.413
r_mcangle_it1.068
r_mcbond_it0.888
r_angle_other_deg0.719
r_symmetry_vdw_other0.248
r_symmetry_hbond_refined0.215
r_nbd_other0.202
r_symmetry_vdw_refined0.198
r_nbd_refined0.189
r_xyhbond_nbd_refined0.182
r_nbtor_refined0.174
r_mcbond_other0.164
r_nbtor_other0.087
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2937
Nucleic Acid Atoms
Solvent Atoms156
Heterogen Atoms137

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
AMoREphasing