☰ Navigation Tabs
Structure of active IspH shows a novel fold with a [3Fe-4S] cluster in the catalytic centre
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 1.6 M Potassium Phosphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.99 58.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.47 α = 90 b = 83.47 β = 90 c = 215.45 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M SILICON OPTICS 2007-08-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0,1.7368 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 98.4 0.075 4.5 78209 78209 2 2 35.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 96 0.351 2.5 3.1 10654
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 15 2 2 78122 74151 3898 98.06 0.2 0.201 0.19898 0.2055 0.23823 0.2414 RANDOM 35.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.17 0.34 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.375 r_dihedral_angle_4_deg 20.569 r_dihedral_angle_3_deg 19.619 r_dihedral_angle_1_deg 5.729 r_scangle_it 4.377 r_scbond_it 2.727 r_angle_refined_deg 1.784 r_mcangle_it 1.468 r_mcbond_it 0.946 r_chiral_restr 0.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.375 r_dihedral_angle_4_deg 20.569 r_dihedral_angle_3_deg 19.619 r_dihedral_angle_1_deg 5.729 r_scangle_it 4.377 r_scbond_it 2.727 r_angle_refined_deg 1.784 r_mcangle_it 1.468 r_mcbond_it 0.946 r_chiral_restr 0.354 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.159 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4780 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms 72
Software Software Software Name Purpose XDS data scaling SHARP phasing REFMAC refinement XDS data reduction