3F7Z

X-ray Co-Crystal Structure of Glycogen Synthase Kinase 3beta in Complex with an Inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5277105 PEG 3350, 0.2M proline, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.2662.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.622α = 90
b = 117.23β = 102.71
c = 67.351γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2006-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.31.0ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45094.60.05617.4332.637996
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4995.70.5112.43829

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.43037843189094.590.2060.2030.253RANDOM30.561
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1-1.112.25-1.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.607
r_mcangle_it3.005
r_scangle_it2.981
r_scbond_it2.07
r_mcbond_it1.861
r_angle_refined_deg1.314
r_nbd_refined0.201
r_symmetry_hbond_refined0.189
r_xyhbond_nbd_refined0.159
r_symmetry_vdw_refined0.154
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.607
r_mcangle_it3.005
r_scangle_it2.981
r_scbond_it2.07
r_mcbond_it1.861
r_angle_refined_deg1.314
r_nbd_refined0.201
r_symmetry_hbond_refined0.189
r_xyhbond_nbd_refined0.159
r_symmetry_vdw_refined0.154
r_chiral_restr0.076
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5416
Nucleic Acid Atoms
Solvent Atoms232
Heterogen Atoms50

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
AMoREphasing