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Human mitochondrial transcription factor A box B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 0.1 M NaAcetate, 0.1 M CdCl2 and 21% PEG 4000, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.48 50.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.28 α = 90 b = 99.35 β = 90 c = 51.91 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 2007-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.98 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 28.96 99.2 0.049 6.83 17556 20.38
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.35 28 15765 1771 99.23 0.19077 0.18815 0.1918 0.21403 0.2183 RANDOM 21.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.28 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.921 r_dihedral_angle_3_deg 16.14 r_dihedral_angle_4_deg 12.91 r_sphericity_free 9.088 r_dihedral_angle_1_deg 7.095 r_sphericity_bonded 7.022 r_scangle_it 4.861 r_mcangle_it 3.949 r_scbond_it 3.331 r_rigid_bond_restr 3.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.921 r_dihedral_angle_3_deg 16.14 r_dihedral_angle_4_deg 12.91 r_sphericity_free 9.088 r_dihedral_angle_1_deg 7.095 r_sphericity_bonded 7.022 r_scangle_it 4.861 r_mcangle_it 3.949 r_scbond_it 3.331 r_rigid_bond_restr 3.294 r_mcbond_it 3.285 r_angle_refined_deg 1.3 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.293 r_nbd_refined 0.273 r_symmetry_hbond_refined 0.271 r_xyhbond_nbd_refined 0.19 r_metal_ion_refined 0.128 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 615 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 6
Software Software Software Name Purpose d*TREK data scaling SOLVE phasing REFMAC refinement d*TREK data reduction