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Structure of chimeric YH CPR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AMO PDB ENTRY 1AMO (FAD domain), 2BF4 (FMN domain) experimental model PDB 2BF4 PDB ENTRY 1AMO (FAD domain), 2BF4 (FMN domain)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEGII from Nextal condition G11, pH8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.39 48.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.8 α = 90 b = 60.7 β = 103.36 c = 78.86 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Kirkpatrick-Baez pair of bi-morph mirrors plus channel cut cryogenically cooled monochromator crystal 2008-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 97.4 0.104 12.7 4 23764 23129 2 2 44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 94.9 0.509 4.2 4 3583
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AMO (FAD domain), 2BF4 (FMN domain) 2.5 19.86 21958 1156 100 0.22549 0.22212 0.224 0.28994 0.2945 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.158 r_dihedral_angle_4_deg 19.589 r_dihedral_angle_3_deg 18.197 r_dihedral_angle_1_deg 5.95 r_angle_refined_deg 1.091 r_angle_other_deg 0.81 r_symmetry_vdw_other 0.235 r_nbd_refined 0.201 r_nbd_other 0.182 r_nbtor_refined 0.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.158 r_dihedral_angle_4_deg 19.589 r_dihedral_angle_3_deg 18.197 r_dihedral_angle_1_deg 5.95 r_angle_refined_deg 1.091 r_angle_other_deg 0.81 r_symmetry_vdw_other 0.235 r_nbd_refined 0.201 r_nbd_other 0.182 r_nbtor_refined 0.179 r_symmetry_hbond_refined 0.173 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.132 r_nbtor_other 0.085 r_xyhbond_nbd_other 0.024 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4769 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 84
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling