X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629815% PEG 3350, 120 mM ammonium sulfate, 60 mM sodium acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.0339.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.941α = 90
b = 92.36β = 95.92
c = 111.669γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDADSC QUANTUM 2102004-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.11.0ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125097.80.1279.773.8935079147922

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2309060288718469597.920.198680.198680.19710.22838RANDOM10.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.090.36-0.650.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.612
r_dihedral_angle_4_deg17.41
r_dihedral_angle_3_deg11.996
r_dihedral_angle_1_deg5.193
r_scangle_it1.438
r_angle_refined_deg1.06
r_scbond_it0.939
r_mcangle_it0.61
r_mcbond_it0.378
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.612
r_dihedral_angle_4_deg17.41
r_dihedral_angle_3_deg11.996
r_dihedral_angle_1_deg5.193
r_scangle_it1.438
r_angle_refined_deg1.06
r_scbond_it0.939
r_mcangle_it0.61
r_mcbond_it0.378
r_nbtor_refined0.302
r_nbd_refined0.179
r_symmetry_vdw_refined0.155
r_xyhbond_nbd_refined0.1
r_symmetry_hbond_refined0.099
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11947
Nucleic Acid Atoms
Solvent Atoms497
Heterogen Atoms

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling