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Structure of cbiO1 from clostridium perfringens: Part of the ABC transporter complex cbiONQ.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.1 M MES pH 6.5,
30% Jeffamine M-600 pH 7
0.05M Cesium Chloride , VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 41.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.701 α = 90 b = 57.578 β = 103.39 c = 41.245 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-02-05 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.979 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.6 0.084 0.065 17.135 4 11602 11602 41.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 97.3 0.395 0.333 2.61 3.8 1119
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 40.13 11601 561 99.18 0.209 0.206 0.2037 0.263 0.259 RANDOM 40.583
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 -1.36 -0.75 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.302 r_dihedral_angle_3_deg 18.905 r_dihedral_angle_4_deg 16.602 r_dihedral_angle_1_deg 5.817 r_scangle_it 3.453 r_scbond_it 2.138 r_angle_refined_deg 1.456 r_mcangle_it 1.35 r_mcbond_it 0.7 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.302 r_dihedral_angle_3_deg 18.905 r_dihedral_angle_4_deg 16.602 r_dihedral_angle_1_deg 5.817 r_scangle_it 3.453 r_scbond_it 2.138 r_angle_refined_deg 1.456 r_mcangle_it 1.35 r_mcbond_it 0.7 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1972 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction SHELXD phasing SHELXE model building PHENIX phasing