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Crystal Structure of ApcT Transporter Bound to 7F11 Monoclonal Fab Fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5 293 0.1M sodium acetate, 0.1M rubidium chloride, 0.1M L-alanine, 40-48% PEG 400, pH 5.0, Microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.76 55.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.365 α = 90 b = 45.9 β = 97.75 c = 158.088 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 50 93.5 0.052 24.3 3.2 36003 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.48 2.59 70.3 0.302 2.1 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.48 50 34182 1819 94.13 0.25033 0.24792 0.2466 0.29568 0.2957 RANDOM 51.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.32 2.46 -2.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.526 r_dihedral_angle_4_deg 17.978 r_dihedral_angle_3_deg 14.999 r_dihedral_angle_1_deg 4.888 r_angle_refined_deg 0.937 r_scangle_it 0.795 r_scbond_it 0.578 r_mcangle_it 0.545 r_mcbond_it 0.359 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.526 r_dihedral_angle_4_deg 17.978 r_dihedral_angle_3_deg 14.999 r_dihedral_angle_1_deg 4.888 r_angle_refined_deg 0.937 r_scangle_it 0.795 r_scbond_it 0.578 r_mcangle_it 0.545 r_mcbond_it 0.359 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.183 r_nbd_refined 0.169 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6714 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling