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Human ferrochelatase with Cd and protoporphyrin IX bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 0.05 ammonium sulfate, Bis-Tris pH 6.5, 20% pentaerththritolethyoxylate, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.66 53.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.266 α = 90 b = 92.827 β = 90 c = 109.555 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 86.266 CCD ADSC QUANTUM 315 2008-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 0.064 0.05 37.5 82065 81244 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.6 0.26 0.19 6.2 7 11498
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 47.19 82065 77731 4182 99.81 0.21 0.21 0.21 0.215 0.25152 0.2165 RANDOM 25.921
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.09 -1.09 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.953 r_dihedral_angle_4_deg 19.435 r_dihedral_angle_3_deg 15.493 r_dihedral_angle_1_deg 5.754 r_scangle_it 3.859 r_scbond_it 2.588 r_angle_refined_deg 1.759 r_mcangle_it 1.757 r_mcbond_it 1.14 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.953 r_dihedral_angle_4_deg 19.435 r_dihedral_angle_3_deg 15.493 r_dihedral_angle_1_deg 5.754 r_scangle_it 3.859 r_scbond_it 2.588 r_angle_refined_deg 1.759 r_mcangle_it 1.757 r_mcbond_it 1.14 r_nbtor_refined 0.311 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5782 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 240
Software Software Software Name Purpose REFMAC refinement CNS refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling CNS phasing