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Crystal Structure of the RA and PH Domains of Grb10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 310 crystals were grown at 17 C in hanging drops containing equal volumes of protein solution and reservoir buffer (~15% PEG 3350, 0.15 M sodium thiocyanate, and 1 mM dithiothreitol (DTT)), pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 310K
Crystal Properties Matthews coefficient Solvent content 2.21 44.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.875 α = 90 b = 48.884 β = 114.14 c = 92.217 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9798 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 99.6 0.062 0.062 13.8 3.8 16167 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.667 99.4 0.323 0.323 3 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 30 15264 821 99.59 0.23221 0.22972 0.2268 0.27689 0.2713 RANDOM 46.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.62 1.26 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.935 r_dihedral_angle_4_deg 18.279 r_dihedral_angle_3_deg 18.158 r_dihedral_angle_1_deg 5.46 r_scangle_it 1.07 r_angle_refined_deg 1.059 r_scbond_it 0.649 r_mcangle_it 0.493 r_nbtor_refined 0.297 r_mcbond_it 0.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.935 r_dihedral_angle_4_deg 18.279 r_dihedral_angle_3_deg 18.158 r_dihedral_angle_1_deg 5.46 r_scangle_it 1.07 r_angle_refined_deg 1.059 r_scbond_it 0.649 r_mcangle_it 0.493 r_nbtor_refined 0.297 r_mcbond_it 0.259 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.122 r_symmetry_hbond_refined 0.073 r_chiral_restr 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3525 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 3
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling